PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC013753.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 275aa    MW: 30159.7 Da    PI: 8.7838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC013753.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-111640327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  ++ C+ff++t tCk+G rCkF+H++
  EcC013753.10 16 EPDCPFFLKTQTCKFGLRCKFNHPR 40
                  789********************96 PP

2zf-CCCH382.8e-126185327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C f+++tG Ck+G++CkF+H++
  EcC013753.10 61 EPPCAFYLKTGNCKFGATCKFHHPK 85
                  79*********************96 PP

3zf-CCCH39.87.6e-13139165127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++ C+f+++tG CkyG++C+++H++
  EcC013753.10 139 PGEVDCPFYLKTGSCKYGATCRYNHPE 165
                   57899********************96 PP

4zf-CCCH41.91.7e-13223246326
                   S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   + +C+++++tG Ck+G+rCkF+H+
  EcC013753.10 223 QIECDYYMKTGVCKFGERCKFHHP 246
                   568********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-41340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8541341IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-91640IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-51842IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-41940IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9765886IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-55885IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-106185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-66185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-66384IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554138166IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5144165IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6220247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028220248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7222249IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11224246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6226246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
APLVTTVESL PQRAGEPDCP FFLKTQTCKF GLRCKFNHPR DKIIPSGTLD DTLNLPERPT  60
EPPCAFYLKT GNCKFGATCK FHHPKDIKVA QVLQDTGAGE LRDSLAENDR MVREVKLVKP  120
LISLSPASSH NTKGLPIRPG EVDCPFYLKT GSCKYGATCR YNHPERNAID LHVGIVPIVG  180
ASPARNPNFA AGSAASIYQA VDPILSQLML GAGPTIYPQR PGQIECDYYM KTGVCKFGER  240
CKFHHPIDRS APTQAMANQS QQTVELTLAG LPRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064113.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X3
RefseqXP_010064114.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X4
SwissprotQ941Q32e-92C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A059BZQ60.0A0A059BZQ6_EUCGR; Uncharacterized protein
STRINGPOPTR_0008s07980.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-93floral homeotic protein (HUA1)